Program

DEFINITIVE PROGRAM including Posters (in PDF format: NGS2009-PROGRAM)

DEFINITIVE BOOK of ABSTRACTS (in PDF format: NGS2009-BOOK)

THURSDAY 1st OCTOBER

8h30 - 9h30: Registration

9h30 - 9h45: Presentation (M. Pérez-Enciso)

9h45 - 10h30: Inaugural speech (Chair: D. Torrents)

R.K. Wilson: Sequencing the Cancer Genome

10h30 - 11h00: General Genomics

G. Marth: Informatics tools for next-generation sequencing analysis

[ 11h00 - 11h30 Coffee break ]

11h30 - 13h00 Technology session (Chair: M. Pérez-Enciso)

11h30 - J. Knight (Roche): Sequencing Solutions for Small and Large Genomes.

12h00 - M.T. Ross (Illumina): Sequencing Human Genomes using Genome analyzer.

12h30 - R. Dixon (Applied Biosystems): Introducing BioScopeT for SOLID System Data Analysis

[ 13h00 - 15h00 LUNCH AND POSTER VIEWING ]

15h00 -16h30: General Genomics (Chair: J. García)

15h00 - G. McVean: The 1000 Genomes Project.

15h30 - H. Himmelbauer: Plant genomics in the era of high-throughput sequencing: the case of the sugar beet.

16h00 - N.J. van Orsouw: Whole Genome profiling: a new method for Sequence Based Whole Genome Physical Mapping.

16h15 - C.H. Cannon: Comparative Genomics of Tropical Evergreen Fagaceae.

[ 16h30 - 17h00 Coffee break ]

17h00 - 18h45: Computational Challenges (Chair: )

17h00 - C. Notredame: Upcoming Challenges for Multiple Sequence Alignment Methods

17h30 - P. Green: Next-generation data analysis.

18h00 - M. Brudno: Discovering INDEL and Copy Number genomic variation from short reads.

18h30 - H. Corrada Bravo: Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data.

18h45 - Bicheng Yang: Sequencing, sequencing and sequencing.

[ 19h00 - GROUP PICTURE ]

[ 19h15 - WELCOME COCKTAIL AND POSTER VIEWING]

FRIDAY 2nd OCTOBER

9h30 - 11h00 - Population Genomics (I) (Chair: A. Navarro)

09h30 - M. Lynch: Maximum-Likelihood Estimation of Population-Genetic Parameters from High-Throughput Sequencing Data.

10h00 - M. Groenen: SNP discovery and analysis of selective sweeps using massive parallel short-read sequencing.

10h30 - L. Ferretti: Population genomics from individual and pool sequencing.

10h45 - I. Ortega-Serrano: A pipeline for studying minor variants in complex genetic populations using long reads from high-throughput sequencing technologies.

[ 11h00 - 11h30 Coffee break ]

11h30 - 13h00 - Population Genomics (II) (Chair: S. E. Ramos-Onsins / D. De Lorenzo)

11h30 - C. Bustamante: Population Genomics in the Personal Genome Era.

12h00 - F. de la Vega: Understanding human genetic variation at the personal and population level through massively-parallel whole-genome sequencing.

12h30 - J. Satkoski: Combining Reduced Representation Libraries and Short-Read Sequencing for High-Throughput SNP Discovery in the Absence of Sequenced Genomes.

12h45 - L. Mularoni: High-Resolution Genome-Wide Mapping of Hermes Transposon Insertion Sites in S. cerevisiae

[ 13h00 - 15h00 LUNCH AND POSTER VIEWING ]

15h00 - 16h30 - Functional Genomics (I) (Chair: J. Bertranpetit)

15h00 - R. Guigó: The transcriptional complexity of the human genome: Insights from Next GenerationTechnologies.

15h30 - A. Clark: Using short-read sequencing to dissect allele-specific expression.

16h00 - N. Naouar: Quantification of Allele-specific Expression Patterns bt GS FLX 454 Technology.

16h15 - V. Boeva: Peak selection coupled with de novo motif identification improves the accuracy of transcription factor binding site prediction in ChIP-Seq data analysis.

[ 11h00 - 11h30 Coffee break ]

17h00 - 18h30 - General and Functional Genomics (II) (Chair: M. Bink)

17h00 - B. Timmermann: Advanced data analysis in targeted resequencing projects.

17h30 - J.M. Rosa-Rosa: High throughput sequencing analysis of linkage assay-identified candidate regions in familial breast cancer: methods, analysis pipeline and troubleshooting.

17h45 - R.B. Parmigiani: Surfing on the surface: mutation detection in human genes coding for cell surface trans-membrane proteins.

18h00 - A.G. Perera: Identification of EMS-Induced Mutations by Whole-Genome Sequencing.

18h15 - C. Pérez-Llamas: IntOGen: A novel framework for integration and data-mining of multidimensional oncogenomic data.

[ 20h30 - CONGRESS DINNER ]

SATURDAY 3rd OCTOBER

09h30 - 10h45 - MetaGenomics (Chair: Kua C. S.)

09h30 - F.O. Gloeckner: Next generation sequencing in marine ecological genomics: tools and applications.

10h00 - D. Rusch: Metagenomics versus Next Generation Sequencing Technologies.

10h30 - M. Hajibabaei: Large-scale biodiversity analysis through next-generation sequencing.

[ 10h45 - 11h15 Coffee break ]

11h15 - 12h15 - EpiGenomics (Chair: J. Cruz Cigudosa)

11h15 - H. Stunnenberg: A systems biology view at transcription regulation networks.

11h45 - S. Beck: Reverse Phenotyping: Towards an integrated (epi)genomic approach to complex phenotypes and common disease.

12h15 - 13h15 - Round Table (Chair: A. Navarro)

[ 13h15 - FAREWELL C0CKTAIL ]

POSTER LIST
(Only shown the Corresponding Author)
Please place your poster in the panel with assigned number

General Genomics

P1. Garcia-Mas, J. Towards the Whole Sequence of the Melon Genome.
P2. Bergero, R. Using 454 Sequencing of ESTs for Linkage Analyses in a Dioecious Plant Species.
P3. Kua, CS. Using a 'Framework Species' Concept for Ecological and Evolutionary Studies in Comparative Genomics.
P4. Esteve, A. Partial Short-Read Resequencing of a Highly Inbred Iberian Pig.
P5. Lin, Y-C. Genome Sequence of the Recombinant Protein Production Host Pichia pastoris.
P6. Tobes, R. Mutant HIV Minority Variants Detected by Ultradeep Sequencing do Not Condition Virological Failure in Patients Starting ARV Therapy Including Low Genetic Barrier Drugs.

Bioinformatics and Population Genomics

P7. Amaral, A.J. Finding Selection Footprints in the Swine Genome Using Massive Parallel Sequencing.
P8. Balzer, S. Novel Tools and Methods for Exploring Pyrosequencing Data Including Quality Assessment and Simulation.
P9. Bink, M. StatSeq : Statistical Challenges on the 1000 Genome Sequences in Plants (EU COST Action TD0801).
P10. Megens, H.-J. Genome-Wide Assessment of Nucleotide Diversity and Signatures of Selection in Chicken Using Massive Parallel Sequencing.
P11. Tobes, R. Cloud Computing and NGS: Massively Parallel Computing for Massively Parallel Sequencing.
P12. Barbadilla, A. Genome Browser of Genetic Diversity in Drosophila.
P13. Toro, M.A. Including Dominance Effects in Genomic Selection.
P14. Unterländer, M. Using Next Generation Sequencing on Ancient DNA – Preamplified Via a New Muliplex Approach – to Detect Migration and Population Structure.

Transcriptomics and Metagenomics

P15. Cancio, I. Pyrosequencing of Non-Model Sentinel Species for Gene Transcription Profiling Studies in Environmental Pollution Monitoring.
P16. Gosalbes M.J. High-Throughput Sequencing Technologies Applied to Human Gut Microbiota Research and Genomics of Pathogens.
P17. Piferrer, F. Analysis of the Gonadal Transcriptome During Sex Determination, Sex Differentiation and Gonadal Maturation in the Sea Bass (Dicentrarchus labrax) and Turbot (Scophthalmus maximus) by 454 Sequencing and Two Specific Oligo-Based Microarrays.
P18. Schönfeld, B. I. K. Rhopalodia gibba and its Spheroid Body - Sequencing Endosymbiosis.
P19. Stuglik, M. Investigating Molecular Basis of Response to Selection in Bank Vole with Next Generation Sequencing.
P20. Haase, B. Selection of Cancer-Related Gene Exons for Targeted Resequencing with a Flexible and Fully Automated Microarray Platform.

NGS2009

Conference on Next Generation Sequencing: Challenges and Opportunities